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Bioaccumulation, Bioremediation, and Phytomining
Do plants hold the key to healing soils and the future of precious metal mining? Bioaccumulation is the process by which organisms...
EndemicBio
Feb 165 min read
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SORTER2 Processor Tutorial: Identifying Hybrid vs. Non-Hybrid Samples
Table of Contents Tutorial Description Introduction Running SORTER2Processor.py Running ADMIXTURE with AdmixturePipeline Running CLUMPAK...
EndemicBio
Nov 18, 202418 min read
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Modeling Bioclimatic Variation Across Latitude and Elevation in the Saguaro Cactus (Carnegiea gigantea)
Introduction The Saguaro cactus ( Carnegiea gigantea ) is an iconic species native to the Sonoran Desert, with its towering arms...
EndemicBio
Nov 12, 20248 min read
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SORTER2 Tutorial: Stages 1A + 1B
Tutorial Introduction In this tutorial we will be walking through how to run SORTER stages 1A and 1B which are the foundation for running...
EndemicBio
Nov 8, 20249 min read
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GBIFBC Toolkit Tutorial: Tracing the Bioclimatic and Genetic Distributions of Pawpaw (Asimina triloba)
Table of Contents Introduction Sourcing Data from GBIF Sourcing WorldClim Raster Data Filtering Dataset and Setting Extent Visualizing...
EndemicBio
Oct 25, 20248 min read
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Introduction to Genomics Sequencing and Data Methods
Genomics projects utilizing next-generation paired-end read data require careful consideration of various factors, depending on the...
EndemicBio
Aug 21, 20246 min read
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Read-Depth and Coverage Metrics with awk and SAMtools
Learn about read depth and coverage, using SAMTools and awk to calculate these statistics from bam files
EndemicBio
Aug 20, 20245 min read
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Introduction to UNIX/LINUX Terminal/Command-Line Computing
Understanding the basics of UNIX/Linux computing on command line interfaces is a core foundation for performing bioinformatic tasks and...
EndemicBio
Jul 27, 20248 min read
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Endemic Bioinformatics: Bridging the gap between industry and research of native ecosystems
Genomic and bioinformatics approaches have become essential for understanding species and harnessing the value of native ecosystems. At...
EndemicBio
May 24, 20242 min read
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